PSME_00034704-RA

Description : (at2g29050 : 143.0) RHOMBOID-like 1 (RBL1); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 4 (TAIR:AT3G53780.2); Has 5724 Blast hits to 5720 proteins in 1694 species: Archae - 148; Bacteria - 3468; Metazoa - 523; Fungi - 153; Plants - 363; Viruses - 0; Other Eukaryotes - 1069 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)

Gene families : OG_42_0000533 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00034704-RA
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
At5g07250	No alias	Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]	0.03	Orthogroups_2024-Update
Glyma.07G132800	No alias	RHOMBOID-like 1	0.03	Orthogroups_2024-Update
LOC_Os11g47840	No alias	OsRhmbd18 - Putative Rhomboid homologue, expressed	0.02	Orthogroups_2024-Update
PSME_00025300-RA	No alias	(at2g29050 : 129.0) RHOMBOID-like 1 (RBL1); FUNCTIONS...	0.04	Orthogroups_2024-Update
PSME_00043491-RA	No alias	(at2g29050 : 90.5) RHOMBOID-like 1 (RBL1); FUNCTIONS IN:...	0.04	Orthogroups_2024-Update
PSME_00049830-RA	No alias	(at2g29050 : 216.0) RHOMBOID-like 1 (RBL1); FUNCTIONS...	0.04	Orthogroups_2024-Update
Sobic.001G532200.1	No alias	protease *(RBL)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004252	serine-type endopeptidase activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0044425	membrane part	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Predicted GO
BP	GO:0008272	sulfate transport	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
BP	GO:0072348	sulfur compound transport	IEP	Predicted GO
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR022764	Peptidase_S54_rhomboid_dom	15	115

External Links

No external refs found!

PSME_00034704-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation