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  5. PSME_00034736-RA

PSME_00034736-RA


Description : (at1g46264 : 92.4) Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.; heat shock transcription factor B4 (HSFB4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 4 (TAIR:AT4G36990.1); Has 2061 Blast hits to 2048 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 468; Plants - 781; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)


Gene families : OG_42_0000092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034736-RA
Cluster HCCA clusters: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
Bradi1g38140 No alias heat shock transcription factor C1 0.02 Orthogroups_2024-Update
Brara.C03963.1 No alias HSF-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os09g28200 No alias HSF-type DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00034738-RA No alias (at1g46264 : 131.0) Encodes SCHIZORIZA, a member of Heat... 0.04 Orthogroups_2024-Update
PSME_00049294-RA No alias (at1g46264 : 152.0) Encodes SCHIZORIZA, a member of Heat... 0.03 Orthogroups_2024-Update
Pp1s19_153V6 No alias heat shock transcription factor 0.02 Orthogroups_2024-Update
Pp1s31_388V6 No alias heat shock transcription factor 1 0.02 Orthogroups_2024-Update
Sobic.001G057700.1 No alias HSF-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G180300.2 No alias HSF-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!