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  5. PSME_00034758-RA

PSME_00034758-RA


Description : (at1g68920 : 116.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034758-RA
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
A4A49_07602 No alias transcription factor bhlh62 0.03 Orthogroups_2024-Update
At5g62610 No alias Transcription factor bHLH79... 0.03 Orthogroups_2024-Update
Bradi3g52790 No alias cryptochrome-interacting basic-helix-loop-helix 1 0.03 Orthogroups_2024-Update
Brara.F00690.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Glyma.06G188100 No alias BIG PETAL P 0.03 Orthogroups_2024-Update
Mp6g18480.1 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 Orthogroups_2024-Update
PSME_00019655-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00019949-RA No alias (at1g68920 : 206.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
Potri.002G235400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G156000 No alias cryptochrome-interacting basic-helix-loop-helix 1 0.03 Orthogroups_2024-Update
Sobic.001G105000.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Solyc03g113550 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g072520 No alias bHLH transcription factor GBOF-1 0.03 Orthogroups_2024-Update
Solyc12g098620 No alias bHLH transcription factor 072 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!