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  5. PSME_00034781-RA

PSME_00034781-RA


Description : (at5g44390 : 411.0) FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, embryo, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44400.1); Has 8763 Blast hits to 8674 proteins in 1286 species: Archae - 135; Bacteria - 4861; Metazoa - 111; Fungi - 1786; Plants - 808; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink). & (reliability: 822.0) & (original description: no original description)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00034781-RA
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
At4g20800 No alias Berberine bridge enzyme-like 17... 0.03 Orthogroups_2024-Update
Brara.G00508.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.I02786.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Glyma.08G080700 No alias FAD-binding Berberine family protein 0.05 Orthogroups_2024-Update
LOC_Os01g18230 No alias FAD-linked oxidoreductase protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00033063-RA No alias (at5g44360 : 384.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
Potri.001G440700 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G161800 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Seita.4G178600.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update
Seita.6G055100.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Sobic.010G163000.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 80 216
IPR012951 BBE 467 525
No external refs found!