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  5. PSME_00035149-RA

PSME_00035149-RA


Description : (at3g15200 : 375.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26696 Blast hits to 9471 proteins in 249 species: Archae - 1; Bacteria - 11; Metazoa - 102; Fungi - 194; Plants - 25787; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink). & (q76c99|rf1_orysa : 123.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 750.0) & (original description: no original description)


Gene families : OG_42_0005801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005801_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035149-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03420 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.E02620.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g05860 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_124637g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
MA_953698g0010 No alias (at3g15200 : 371.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
Solyc12g014000 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen12g005750 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 520 565
IPR002885 Pentatricopeptide_repeat 414 463
IPR002885 Pentatricopeptide_repeat 241 268
No external refs found!