1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00035151-RA

PSME_00035151-RA


Description : (at1g64760 : 568.0) O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G19440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p52409|e13b_wheat : 204.0) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) - Triticum aestivum (Wheat) & (reliability: 1082.0) & (original description: no original description)


Gene families : OG_42_0000342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035151-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_26158 No alias glucan endo-1,3-beta-glucosidase 8 0.02 Orthogroups_2024-Update
HORVU0Hr1G010040.2 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
PSME_00004845-RA No alias (at2g19440 : 461.0) O-Glycosyl hydrolases family 17... 0.03 Orthogroups_2024-Update
Pp1s197_52V6 No alias glucan endo- -beta-glucosidase 0.02 Orthogroups_2024-Update
Seita.3G166200.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Seita.4G229000.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc07g017730 No alias Glucan endo-1,3-beta-glucosidase, putative (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen04g007230 No alias Glycosyl hydrolases family 17 0.02 Orthogroups_2024-Update
Sopen07g006550 No alias Glycosyl hydrolases family 17 0.04 Orthogroups_2024-Update
Sopen10g029160 No alias Glycosyl hydrolases family 17 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
InterPro domains Description Start Stop
IPR012946 X8 369 438
IPR000490 Glyco_hydro_17 25 345
No external refs found!