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  5. PSME_00035290-RA

PSME_00035290-RA


Description : (at3g03740 : 221.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035290-RA
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
At5g21010 No alias BTB/POZ and MATH domain-containing protein 5... 0.03 Orthogroups_2024-Update
Bradi3g18271 No alias BTB-POZ and MATH domain 1 0.05 Orthogroups_2024-Update
Bradi4g13864 No alias BTB/POZ/MATH-domains containing protein 0.04 Orthogroups_2024-Update
Bradi5g22356 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
Brara.C02029.1 No alias substrate adaptor *(BPM) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
GRMZM2G027688 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
GRMZM2G125162 No alias BTB-POZ and MATH domain 1 0.03 Orthogroups_2024-Update
GRMZM2G574887 No alias BTB-POZ and MATH domain 1 0.05 Orthogroups_2024-Update
HORVU7Hr1G094540.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os07g01140 No alias MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os10g29750 No alias MBTB56 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os10g29790 No alias MBTB57 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
MA_17704g0010 No alias (at3g03740 : 518.0) BTB-POZ and MATH domain 4 (BPM4);... 0.05 Orthogroups_2024-Update
Potri.019G039500 No alias BTB-POZ and MATH domain 4 0.02 Orthogroups_2024-Update
Seita.9G180700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G264400.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR011705 BACK 214 253
IPR000210 BTB/POZ_dom 103 200
No external refs found!