PSME_00035379-RA

Description : (o04135|knap2_maldo : 179.0) Homeobox protein knotted-1-like 2 (KNAP2) - Malus domestica (Apple) (Malus sylvestris) & (at4g08150 : 172.0) A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.; KNOTTED-like from Arabidopsis thaliana (KNAT1); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOX/ELK homeobox transcription factor (TAIR:AT1G62360.1); Has 31270 Blast hits to 14770 proteins in 476 species: Archae - 4; Bacteria - 107; Metazoa - 2529; Fungi - 972; Plants - 3913; Viruses - 2; Other Eukaryotes - 23743 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00035379-RA
Cluster	HCCA clusters: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
135843	No alias	KNOTTED1-like homeobox gene 4	0.03	Orthogroups_2024-Update
A4A49_16694	No alias	homeotic protein knotted-1	0.05	Orthogroups_2024-Update
Bradi1g76970	No alias	KNOTTED-like homeobox of Arabidopsis thaliana 7	0.02	Orthogroups_2024-Update
Brara.B01915.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Brara.C02557.1	No alias	KNOX-type transcription factor	0.07	Orthogroups_2024-Update
Brara.I01459.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Glyma.02G269900	No alias	KNOX/ELK homeobox transcription factor	0.03	Orthogroups_2024-Update
PSME_00033424-RA	No alias	(at4g08150 : 121.0) A member of class I knotted1-like...	0.04	Orthogroups_2024-Update
Potri.004G004700	No alias	KNOX/ELK homeobox transcription factor	0.02	Orthogroups_2024-Update
Sobic.001G106000.2	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G023900.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Predicted GO
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
MF	GO:0008017	microtubule binding	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
BP	GO:0009611	response to wounding	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0030414	peptidase inhibitor activity	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0061134	peptidase regulator activity	IEP	Predicted GO
MF	GO:0061135	endopeptidase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	49	68
IPR008422	Homeobox_KN_domain	87	126

External Links

No external refs found!

PSME_00035379-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation