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  5. PSME_00035381-RA

PSME_00035381-RA


Description : (p46609|osh1_orysa : 118.0) Homeobox protein OSH1 - Oryza sativa (Rice) & (at1g23380 : 117.0) homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.; KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana 2 (TAIR:AT1G70510.1); Has 6018 Blast hits to 6018 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 1717; Fungi - 270; Plants - 3877; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)


Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035381-RA
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Bradi1g76970 No alias KNOTTED-like homeobox of Arabidopsis thaliana 7 0.02 Orthogroups_2024-Update
Brara.B01915.1 No alias KNOX-type transcription factor 0.03 Orthogroups_2024-Update
Brara.F02723.1 No alias KNOX-type transcription factor 0.05 Orthogroups_2024-Update
Brara.H02211.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Brara.I01459.1 No alias KNOX-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.02G036900 No alias KNOTTED1-like homeobox gene 6 0.02 Orthogroups_2024-Update
Glyma.04G049500 No alias KNOTTED-like from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Glyma.04G064100 No alias KNOTTED1-like homeobox gene 3 0.02 Orthogroups_2024-Update
Glyma.04G185100 No alias KNOTTED1-like homeobox gene 6 0.02 Orthogroups_2024-Update
Glyma.09G095700 No alias KNOTTED1-like homeobox gene 3 0.04 Orthogroups_2024-Update
Glyma.17G010200 No alias KNOX/ELK homeobox transcription factor 0.03 Orthogroups_2024-Update
Glyma.18G083100 No alias KNOTTED1-like homeobox gene 5 0.03 Orthogroups_2024-Update
Glyma.19G228300 No alias KNOTTED1-like homeobox gene 6 0.06 Orthogroups_2024-Update
LOC_Os02g08544 No alias homeobox protein knotted-1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g03884 No alias homeobox protein knotted-1-like 6, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428446g0010 No alias (at4g08150 : 291.0) A member of class I knotted1-like... 0.03 Orthogroups_2024-Update
PSME_00033425-RA No alias (o04135|knap2_maldo : 176.0) Homeobox protein... 0.04 Orthogroups_2024-Update
Potri.002G113300 No alias KNOTTED-like from Arabidopsis thaliana 0.02 Orthogroups_2024-Update
Potri.005G017200 No alias KNOTTED1-like homeobox gene 6 0.03 Orthogroups_2024-Update
Potri.011G011100 No alias KNOX/ELK homeobox transcription factor 0.02 Orthogroups_2024-Update
Seita.9G074700.1 No alias KNOX-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G106000.2 No alias KNOX-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g100510 No alias knotted 4 0.02 Orthogroups_2024-Update
Solyc05g005090 No alias Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005541 KNOX2 240 285
IPR005540 KNOX1 188 230
No external refs found!