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  5. PSME_00035406-RA

PSME_00035406-RA


Description : (at3g24140 : 294.0) Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.; FAMA (FMA); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G72210.1); Has 1771 Blast hits to 1747 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 80; Plants - 1654; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). & (reliability: 588.0) & (original description: no original description)


Gene families : OG_42_0000286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035406-RA
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Brara.A02600.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Brara.A03674.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D00077.1 No alias bHLH-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os02g15760 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.9G511700.1 No alias bHLH-type transcription factor 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 244 295
No external refs found!