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  5. PSME_00035449-RA

PSME_00035449-RA


Description : (at1g79740 : 128.0) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035449-RA
Cluster HCCA clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G079100 No alias hAT dimerisation domain-containing protein 0.02 Orthogroups_2024-Update
PSME_00000138-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00003380-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00021945-RA No alias (at5g33406 : 100.0) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update
PSME_00022489-RA No alias (at5g33406 : 99.0) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update
Solyc09g005650 No alias LOW QUALITY:HAT transposon superfamily protein, putative... 0.03 Orthogroups_2024-Update
Sopen10g007400 No alias Protein of unknown function (DUF 659) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR025558 DUF4283 423 521
IPR007021 DUF659 4 64
No external refs found!