PSME_00035547-RA

Description : (at4g36920 : 332.0) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.; APETALA 2 (AP2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 3 (TAIR:AT5G67180.1). & (q8l3u3|bbm1_brana : 142.0) Protein BABY BOOM 1 (BnBBM1) - Brassica napus (Rape) & (reliability: 664.0) & (original description: no original description)

Gene families : OG_42_0000060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00035547-RA
Cluster	HCCA clusters: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
A4A49_03231	No alias	ap2-like ethylene-responsive transcription factor bbm2	0.04	Orthogroups_2024-Update
Bradi4g30617	No alias	ARIA-interacting double AP2 domain protein	0.02	Orthogroups_2024-Update
Brara.J01371.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.03	Orthogroups_2024-Update
Brara.J01807.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.02	Orthogroups_2024-Update
GRMZM2G124524	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G220800	No alias	ARIA-interacting double AP2 domain protein	0.03	Orthogroups_2024-Update
Glyma.08G227700	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
LOC_Os06g05340	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00038322-RA	No alias	(at1g72570 : 351.0) Integrase-type DNA-binding...	0.01	Orthogroups_2024-Update
PSME_00040180-RA	No alias	(at2g41710 : 242.0) Integrase-type DNA-binding...	0.03	Orthogroups_2024-Update
Potri.018G091600	No alias	AINTEGUMENTA-like 5	0.03	Orthogroups_2024-Update
Sobic.003G390600.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.02	Orthogroups_2024-Update
Solyc05g051380	No alias	AP2-like ethylene-responsive transcription factor (AHRD...	0.03	Orthogroups_2024-Update
Solyc11g010710	No alias	AP2-like ethylene-responsive transcription factor (AHRD...	0.02	Orthogroups_2024-Update
Sopen02g015090	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen06g025830	No alias	AP2 domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004312	fatty acid synthase activity	IEP	Predicted GO
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
BP	GO:0009415	response to water	IEP	Predicted GO
MF	GO:0016289	CoA hydrolase activity	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0019310	inositol catabolic process	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO
BP	GO:0032502	developmental process	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0046164	alcohol catabolic process	IEP	Predicted GO
BP	GO:0046174	polyol catabolic process	IEP	Predicted GO
BP	GO:0048856	anatomical structure development	IEP	Predicted GO
MF	GO:0050113	inositol oxygenase activity	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	279	329
IPR001471	AP2/ERF_dom	197	235

External Links

No external refs found!

PSME_00035547-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation