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  5. PSME_00035589-RA

PSME_00035589-RA


Description : (at5g05390 : 699.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 196.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1398.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00035589-RA
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.02 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.02 Orthogroups_2024-Update
Bradi3g59177 No alias laccase 14 0.02 Orthogroups_2024-Update
Brara.J01366.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.03 Orthogroups_2024-Update
Glyma.18G023600 No alias laccase 5 0.02 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
PSME_00007334-RA No alias (at5g05390 : 687.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00010271-RA No alias (at5g05390 : 664.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
PSME_00014449-RA No alias (at5g60020 : 734.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00015371-RA No alias (at5g05390 : 674.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00026986-RA No alias (at5g05390 : 621.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00027898-RA No alias (at5g05390 : 748.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00030810-RA No alias (at5g05390 : 572.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00031239-RA No alias (at1g18140 : 634.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00033274-RA No alias (at5g03260 : 805.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00039722-RA No alias (at5g05390 : 721.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00042485-RA No alias (at5g05390 : 782.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
Sobic.008G090800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 54 119
IPR001117 Cu-oxidase 133 282
IPR011706 Cu-oxidase_2 390 520
No external refs found!