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  5. PSME_00036068-RA

PSME_00036068-RA


Description : (at1g30760 : 377.0) FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT2G34790.1); Has 5139 Blast hits to 5066 proteins in 829 species: Archae - 62; Bacteria - 2468; Metazoa - 28; Fungi - 1653; Plants - 688; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink). & (reliability: 754.0) & (original description: no original description)


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036068-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AC203909.3_FG003 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
AC203909.3_FG007 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Bradi3g35067 No alias FAD-binding Berberine family protein 0.06 Orthogroups_2024-Update
Bradi4g18970 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Brara.A01126.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update
Brara.C01758.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.G00508.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.I02784.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Brara.I03113.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
GRMZM2G124078 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
GRMZM2G173105 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.06G321500 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.06G321600 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Glyma.08G080200 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Glyma.08G080600 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Glyma.15G133900 No alias FAD-binding Berberine family protein 0.04 Orthogroups_2024-Update
Glyma.15G134300 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G072520.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.05 Orthogroups_2024-Update
MA_5468901g0010 No alias (at5g44400 : 157.0) FAD-binding Berberine family... 0.05 Orthogroups_2024-Update
MA_8334627g0010 No alias (at5g44380 : 148.0) FAD-binding Berberine family... 0.05 Orthogroups_2024-Update
PSME_00030437-RA No alias (at2g34810 : 230.0) FAD-binding Berberine family... 0.04 Orthogroups_2024-Update
Potri.001G463300 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.001G463600 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.001G470100 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G162800 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Potri.011G162900 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Seita.4G178600.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Seita.6G055100.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Sobic.010G162900.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.03 Orthogroups_2024-Update
Solyc02g079440 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT4G20860.1) 0.03 Orthogroups_2024-Update
Sopen03g002700 No alias Berberine and berberine like 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 74 210
IPR012951 BBE 469 531
No external refs found!