1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00036164-RA

PSME_00036164-RA


Description : (at1g48930 : 712.0) glycosyl hydrolase 9C1 (GH9C1); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1873 Blast hits to 1853 proteins in 259 species: Archae - 2; Bacteria - 684; Metazoa - 175; Fungi - 17; Plants - 924; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (q5nat0|gun2_orysa : 659.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 1424.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036164-RA
Cluster HCCA clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
At1g19940 No alias Endoglucanase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXI9] 0.02 Orthogroups_2024-Update
At4g39000 No alias Endoglucanase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY58] 0.02 Orthogroups_2024-Update
Brara.E01094.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G03367.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01325.1 No alias class-C endo-1,4-beta-glucanase 0.05 Orthogroups_2024-Update
Brara.I03254.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
GRMZM2G048165 No alias glycosyl hydrolase 9B18 0.02 Orthogroups_2024-Update
HORVU6Hr1G073570.3 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
PSME_00001650-RA No alias (at4g11050 : 540.0) glycosyl hydrolase 9C3 (GH9C3);... 0.05 Orthogroups_2024-Update
Potri.001G092200 No alias glycosyl hydrolase 9C2 0.02 Orthogroups_2024-Update
Pp1s19_105V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Seita.3G076100.1 No alias class-C endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Seita.5G019600.1 No alias class-C endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Seita.6G133700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G148500.1 No alias class-B endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
Sobic.004G021400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc07g049300 No alias Endoglucanase (AHRD V3.3 *** M0ZJ27_SOLTU) 0.03 Orthogroups_2024-Update
Sopen01g052490 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
MF GO:0030246 carbohydrate binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008198 ferrous iron binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 36 495
IPR019028 CBM_49 510 588
No external refs found!