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  5. PSME_00036178-RA

PSME_00036178-RA


Description : (at4g18520 : 129.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 48062 Blast hits to 12645 proteins in 202 species: Archae - 0; Bacteria - 8; Metazoa - 107; Fungi - 40; Plants - 47280; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)


Gene families : OG_42_0000060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036178-RA
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
A4A49_28363 No alias ap2-like ethylene-responsive transcription factor ail5 0.02 Orthogroups_2024-Update
At5g10510 No alias AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7] 0.03 Orthogroups_2024-Update
Bradi4g30617 No alias ARIA-interacting double AP2 domain protein 0.03 Orthogroups_2024-Update
Brara.B01213.1 No alias AP2-type transcription factor *(WRI/AIL) 0.04 Orthogroups_2024-Update
Brara.B02033.1 No alias AP2-type transcription factor *(WRI/AIL) 0.03 Orthogroups_2024-Update
Brara.G01191.1 No alias AP2-type transcription factor *(WRI/AIL) 0.02 Orthogroups_2024-Update
Brara.J01371.1 No alias AP2-type transcription factor *(WRI/AIL) 0.02 Orthogroups_2024-Update
GRMZM2G113078 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G047900 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Glyma.05G091200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G108600 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Glyma.07G021000 No alias ARIA-interacting double AP2 domain protein 0.03 Orthogroups_2024-Update
Glyma.07G038200 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G045800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G073300 No alias related to AP2.7 0.02 Orthogroups_2024-Update
Glyma.15G044400 No alias related to AP2.7 0.02 Orthogroups_2024-Update
Glyma.16G007400 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G004480.38 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g19900 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
Potri.005G140700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G049700 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G007400 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Pp1s17_137V6 No alias ap2 domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.7G322700.1 No alias AP2-type transcription factor *(WRI/AIL) 0.03 Orthogroups_2024-Update
Sobic.001G036800.1 No alias AP2-type transcription factor *(WRI/AIL) 0.03 Orthogroups_2024-Update
Solyc09g007260 No alias AP2-like ethylene-responsive transcription factor (AHRD... 0.03 Orthogroups_2024-Update
Sopen03g041210 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen09g002150 No alias AP2 domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 36 82
No external refs found!