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  5. PSME_00036208-RA

PSME_00036208-RA


Description : (at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.; SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 38598 Blast hits to 29293 proteins in 2471 species: Archae - 323; Bacteria - 8462; Metazoa - 11641; Fungi - 6683; Plants - 2383; Viruses - 257; Other Eukaryotes - 8849 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 82.8) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 400.0) & (original description: no original description)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036208-RA
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
A4A49_50225 No alias chromatin structure-remodeling complex protein syd 0.04 Orthogroups_2024-Update
At5g19310 No alias Probable ATP-dependent DNA helicase CHR23... 0.01 Orthogroups_2024-Update
Brara.G01231.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.01G073400 No alias SNF2 domain-containing protein / helicase... 0.05 Orthogroups_2024-Update
LOC_Os01g27040 No alias chromatin-remodeling complex ATPase chain, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g05230 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.01 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
Pp1s54_314V6 No alias snf2-family atp dependent chromatin remodeling factor snf21 0.06 Orthogroups_2024-Update
Solyc02g062780 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.02 Orthogroups_2024-Update
evm.model.contig_2672.1 No alias (at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 34 163
No external refs found!