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  5. PSME_00036268-RA

PSME_00036268-RA


Description : (at4g23790 : 343.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 24 (TBL24); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 23 (TAIR:AT4G11090.1); Has 1329 Blast hits to 1312 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1325; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 686.0) & (original description: no original description)


Gene families : OG_42_0000195 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000195_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036268-RA
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
A4A49_16870 No alias protein trichome birefringence-like 19 0.02 Orthogroups_2024-Update
At5g51640 No alias Protein YLS7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM0] 0.01 Orthogroups_2024-Update
Bradi2g45350 No alias TRICHOME BIREFRINGENCE-LIKE 21 0.03 Orthogroups_2024-Update
Bradi4g29271 No alias TRICHOME BIREFRINGENCE-LIKE 27 0.03 Orthogroups_2024-Update
Brara.G02444.1 No alias xyloglucan O-acetyltransferase *(AXY4) 0.03 Orthogroups_2024-Update
Brara.K00788.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp8g08270.1 No alias mannan O-acetyltransferase (MOAT) 0.02 Orthogroups_2024-Update
Potri.011G144100 No alias TRICHOME BIREFRINGENCE-LIKE 22 0.02 Orthogroups_2024-Update
Pp1s326_28V6 No alias F6F3.23; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR026057 PC-Esterase 184 476
IPR025846 PMR5_N_dom 133 181
No external refs found!