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  5. PSME_00036287-RA

PSME_00036287-RA


Description : (at1g02065 : 120.0) Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.; squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o04003|lg1_maize : 112.0) LIGULELESS1 protein - Zea mays (Maize) & (reliability: 240.0) & (original description: no original description)


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036287-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.03 Orthogroups_2024-Update
A4A49_27951 No alias squamosa promoter-binding-like protein 8 0.03 Orthogroups_2024-Update
GRMZM5G878561 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.05G019000 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.06G205701 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.12G162999 No alias squamosa promoter-binding protein-like 12 0.02 Orthogroups_2024-Update
HORVU1Hr1G060750.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU5Hr1G076380.9 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g56170 No alias OsSPL8 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
MA_3179g0020 No alias (at1g02065 : 176.0) Encodes an SBP-box gene, a member of... 0.04 Orthogroups_2024-Update
MA_47367g0010 No alias (at1g02065 : 173.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
PSME_00047223-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.001G398200 No alias squamosa promoter binding protein-like 5 0.03 Orthogroups_2024-Update
Potri.012G100700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Potri.018G149900 No alias squamosa promoter binding protein-like 2 0.03 Orthogroups_2024-Update
Seita.3G022100.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Sopen12g018830 No alias SBP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 64 136
No external refs found!