PSME_00036304-RA

Description : (at1g52880 : 273.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q52qh4|nac68_orysa : 231.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 544.0) & (original description: no original description)

Gene families : OG_42_0000084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000084_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00036304-RA
Cluster	HCCA clusters: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
At1g69490	No alias	NAP [Source:UniProtKB/TrEMBL;Acc:A0A178W8K0]	0.03	Orthogroups_2024-Update
Glyma.06G166500	No alias	NAC domain containing protein 83	0.03	Orthogroups_2024-Update
Glyma.08G360200	No alias	NAC domain containing protein 83	0.03	Orthogroups_2024-Update
Glyma.13G279900	No alias	NAC domain containing protein 3	0.03	Orthogroups_2024-Update
PSME_00017634-RA	No alias	(q52qh4\|nac68_orysa : 241.0) NAC domain-containing...	0.04	Orthogroups_2024-Update
PSME_00027176-RA	No alias	(at1g52880 : 226.0) Transcription factor with a NAC...	0.03	Orthogroups_2024-Update
PSME_00030259-RA	No alias	(q7f2l3\|nac48_orysa : 263.0) NAC domain-containing...	0.05	Orthogroups_2024-Update
PSME_00055222-RA	No alias	(at1g01720 : 234.0) Belongs to a large family of...	0.04	Orthogroups_2024-Update
Sobic.008G021800.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G140500.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0004096	catalase activity	IEP	Predicted GO
MF	GO:0004399	histidinol dehydrogenase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
MF	GO:0008146	sulfotransferase activity	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	34	162

External Links

No external refs found!

PSME_00036304-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation