1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00036410-RA

PSME_00036410-RA


Description : (at2g22070 : 580.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 129.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1160.0) & (original description: no original description)


Gene families : OG_42_0009665 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009665_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036410-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
MA_187514g0010 No alias (at1g11290 : 573.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
Potri.005G119000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 247 274
IPR002885 Pentatricopeptide_repeat 218 243
IPR002885 Pentatricopeptide_repeat 516 545
IPR002885 Pentatricopeptide_repeat 443 475
IPR002885 Pentatricopeptide_repeat 375 423
IPR002885 Pentatricopeptide_repeat 275 322
IPR002885 Pentatricopeptide_repeat 143 190
IPR032867 DYW_dom 549 673
No external refs found!