1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00036710-RA

PSME_00036710-RA


Description : (at1g78130 : 617.0) unfertilized embryo sac 2 (UNE2); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G10190.1); Has 16910 Blast hits to 16851 proteins in 2099 species: Archae - 450; Bacteria - 14339; Metazoa - 386; Fungi - 319; Plants - 340; Viruses - 3; Other Eukaryotes - 1073 (source: NCBI BLink). & (reliability: 1234.0) & (original description: no original description)


Gene families : OG_42_0000520 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000520_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00036710-RA
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Brara.A00192.1 No alias UMF15-type solute transporter 0.04 Orthogroups_2024-Update
LOC_Os08g31670 No alias transporter, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g19640.1 No alias MFS-type solute transporter 0.03 Orthogroups_2024-Update
Pp1s55_231V6 No alias AP22.91; transporter-related [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.002G185800.1 No alias UMF15-type solute transporter 0.06 Orthogroups_2024-Update
Sopen04g029160 No alias Major Facilitator Superfamily 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR011701 MFS 28 353
No external refs found!