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  5. PSME_00037063-RA

PSME_00037063-RA


Description : (at4g18750 : 572.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 120.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1088.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037063-RA
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
108969 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
34426 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
42377 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
At1g03510 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
MA_101084g0010 No alias (at1g11290 : 688.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
MA_10430355g0010 No alias (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
MA_10431227g0020 No alias (at3g57430 : 629.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_118886g0010 No alias (at2g22070 : 615.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
MA_123466g0010 No alias (at3g57430 : 553.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_138676g0010 No alias (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... 0.06 Orthogroups_2024-Update
MA_139163g0010 No alias (at4g13650 : 549.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_141731g0010 No alias (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... 0.07 Orthogroups_2024-Update
MA_14381g0010 No alias (at3g12770 : 611.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.07 Orthogroups_2024-Update
MA_185098g0010 No alias (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... 0.05 Orthogroups_2024-Update
MA_25515g0010 No alias (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_381817g0020 No alias (at2g22070 : 544.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_440697g0010 No alias (at4g18750 : 611.0) Encodes a pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
MA_483636g0010 No alias (at3g61170 : 684.0) Tetratricopeptide repeat (TPR)-like... 0.09 Orthogroups_2024-Update
MA_52613g0020 No alias (at4g33170 : 570.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_5481g0010 No alias (at4g18750 : 690.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_77675g0010 No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
MA_9384g0020 No alias (at3g49170 : 527.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
MA_98224g0010 No alias (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_99849g0010 No alias (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 243 270
IPR002885 Pentatricopeptide_repeat 433 456
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 54 93
IPR002885 Pentatricopeptide_repeat 358 404
IPR032867 DYW_dom 531 655
No external refs found!