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  5. PSME_00037219-RA

PSME_00037219-RA


Description : (at5g64270 : 421.0) splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description)


Gene families : OG_42_0001775 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001775_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037219-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre12.g494100 No alias splicing factor, putative 0.01 Orthogroups_2024-Update
LOC_Os02g05310 No alias splicing factor 3B subunit 1, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00003514-RA No alias (at5g64270 : 350.0) splicing factor, putative; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00031698-RA No alias (at5g64270 : 358.0) splicing factor, putative; FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00038970-RA No alias (at5g64270 : 226.0) splicing factor, putative; FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00043935-RA No alias (at5g64270 : 308.0) splicing factor, putative; FUNCTIONS... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR024746 Glyco_hydro_100 3 105
No external refs found!