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  5. PSME_00037242-RA

PSME_00037242-RA


Description : (at1g24190 : 231.0) Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.; SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1). & (reliability: 440.0) & (original description: no original description)


Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037242-RA
Cluster HCCA clusters: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
At1g23810 No alias F5O8.36 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB5] 0.02 Orthogroups_2024-Update
Cre03.g180800 No alias SIN3-like 4 0.02 Orthogroups_2024-Update
PSME_00030011-RA No alias (at1g70060 : 265.0) Encodes a homolog of the... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006450 regulation of translational fidelity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 78 156
No external refs found!