PSME_00037351-RA

Description : (at3g28345 : 1429.0) ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 1417.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 2858.0) & (original description: no original description)

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00037351-RA
Cluster	HCCA clusters: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
176522	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
At1g10680	No alias	ABC transporter B family member 10...	0.03	Orthogroups_2024-Update
Bradi2g47337	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi2g47347	No alias	P-glycoprotein 11	0.02	Orthogroups_2024-Update
Bradi2g47410	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi3g20045	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
Brara.F03154.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
GRMZM2G085236	No alias	ATP binding cassette subfamily B19	0.03	Orthogroups_2024-Update
Glyma.01G016500	No alias	P-glycoprotein 2	0.05	Orthogroups_2024-Update
Glyma.13G222000	No alias	P-glycoprotein 9	0.03	Orthogroups_2024-Update
Glyma.16G078100	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update
Glyma.17G041300	No alias	ATP binding cassette subfamily B4	0.05	Orthogroups_2024-Update
MA_114017g0010	No alias	(q6yuu5\|mdr_orysa : 1316.0) Putative multidrug...	0.04	Orthogroups_2024-Update
MA_138894g0010	No alias	(at2g47000 : 1332.0) Multidrug resistance ...	0.03	Orthogroups_2024-Update
MA_934204g0010	No alias	(at3g28345 : 1352.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
PSME_00005534-RA	No alias	(at3g62150 : 1137.0) P-glycoprotein 21 (PGP21);...	0.04	Orthogroups_2024-Update
PSME_00022615-RA	No alias	(at3g28345 : 1390.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
PSME_00030174-RA	No alias	(at2g47000 : 1538.0) Multidrug resistance ...	0.04	Orthogroups_2024-Update
PSME_00031136-RA	No alias	(at1g02520 : 633.0) P-glycoprotein 11 (PGP11); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00035518-RA	No alias	(at2g39480 : 1505.0) P-glycoprotein 6 (PGP6); FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.006G074100	No alias	ABC transporter family protein	0.03	Orthogroups_2024-Update
Seita.5G282700.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Solyc07g064120	No alias	ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
BP	GO:0009116	nucleoside metabolic process	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	404	539
IPR003439	ABC_transporter-like	1021	1169
IPR011527	ABC1_TM_dom	682	951
IPR011527	ABC1_TM_dom	62	329

External Links

No external refs found!

PSME_00037351-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation