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  5. PSME_00037360-RA

PSME_00037360-RA


Description : (at1g08360 : 341.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G27530.2); Has 3821 Blast hits to 3820 proteins in 1247 species: Archae - 280; Bacteria - 1757; Metazoa - 462; Fungi - 186; Plants - 511; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink). & (q9sw75|rl10a_chlre : 255.0) 60S ribosomal protein L10a - Chlamydomonas reinhardtii & (reliability: 682.0) & (original description: no original description)


Gene families : OG_42_0001635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037360-RA
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
230302 No alias Ribosomal protein L1p/L10e family 0.11 Orthogroups_2024-Update
A4A49_21782 No alias 60s ribosomal protein l10a-1 0.05 Orthogroups_2024-Update
At5g22440 No alias 60S ribosomal protein L10a-3... 0.05 Orthogroups_2024-Update
Bradi2g55600 No alias Ribosomal protein L1p/L10e family 0.06 Orthogroups_2024-Update
Bradi3g42800 No alias Ribosomal protein L1p/L10e family 0.06 Orthogroups_2024-Update
Brara.B00972.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.C01003.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Brara.D01641.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.G01318.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.J01470.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Cre02.g101350 No alias Ribosomal protein L1p/L10e family 0.11 Orthogroups_2024-Update
GRMZM2G023748 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Glyma.11G231000 No alias Ribosomal protein L1p/L10e family 0.06 Orthogroups_2024-Update
Glyma.12G184900 No alias Ribosomal protein L1p/L10e family 0.09 Orthogroups_2024-Update
Glyma.13G316400 No alias Ribosomal protein L1p/L10e family 0.11 Orthogroups_2024-Update
Glyma.18G026100 No alias Ribosomal protein L1p/L10e family 0.11 Orthogroups_2024-Update
Glyma.19G194922 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
HORVU3Hr1G084310.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU4Hr1G001350.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
HORVU7Hr1G059090.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00440_0070 kfl00440_0070_v1.... (at2g27530 : 310.0) Encodes ribosomal protein L10aP.... 0.07 Orthogroups_2024-Update
LOC_Os02g21660 No alias L1P family of ribosomal proteins domain containing... 0.02 Orthogroups_2024-Update
MA_12000g0010 No alias (at5g22440 : 343.0) Ribosomal protein L1p/L10e family;... 0.06 Orthogroups_2024-Update
MA_71921g0010 No alias (at1g08360 : 345.0) Ribosomal protein L1p/L10e family;... 0.05 Orthogroups_2024-Update
Mp3g07650.1 No alias component RPL10a of LSU proteome component 0.03 Orthogroups_2024-Update
Potri.004G202766 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Potri.004G202832 No alias Ribosomal protein L1p/L10e family 0.06 Orthogroups_2024-Update
Potri.007G034800 No alias Ribosomal protein L1p/L10e family 0.07 Orthogroups_2024-Update
Potri.007G035600 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Pp1s18_121V6 No alias 60s ribosomal protein l10a-1 0.07 Orthogroups_2024-Update
Pp1s40_297V6 No alias 60s ribosomal protein l10a-1 0.07 Orthogroups_2024-Update
Seita.5G389700.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Sobic.003G363800.2 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc01g009520 No alias Ribosomal protein (AHRD V3.3 *** K4ATE8_SOLLC) 0.1 Orthogroups_2024-Update
Solyc06g074300 No alias 5'-3' exonuclease family protein (AHRD V3.3 --* AT3G28030.4) 0.1 Orthogroups_2024-Update
Solyc11g068420 No alias Ribosomal protein (AHRD V3.3 *** M1CHW0_SOLTU) 0.09 Orthogroups_2024-Update
Sopen01g005070 No alias Ribosomal protein L1p/L10e family 0.13 Orthogroups_2024-Update
Sopen06g030750 No alias Ribosomal protein L1p/L10e family 0.11 Orthogroups_2024-Update
Sopen11g027130 No alias Ribosomal protein L1p/L10e family 0.09 Orthogroups_2024-Update
evm.model.contig_2315.2 No alias (at2g27530 : 237.0) Encodes ribosomal protein L10aP.... 0.15 Orthogroups_2024-Update
evm.model.tig00020697.31 No alias (at5g22440 : 146.0) Ribosomal protein L1p/L10e family;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 23 210
No external refs found!