PSME_00037383-RA


Description : (at5g03340 : 700.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 691.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1400.0) & (original description: no original description)


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037383-RA
Cluster HCCA clusters: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Bradi1g74922 No alias ATPase, AAA-type, CDC48 protein 0.03 Orthogroups_2024-Update
PSME_00006623-RA No alias (at5g03340 : 1057.0) ATPase, AAA-type, CDC48 protein;... 0.05 Orthogroups_2024-Update
PSME_00016622-RA No alias (at5g03340 : 1148.0) ATPase, AAA-type, CDC48 protein;... 0.03 Orthogroups_2024-Update
PSME_00030820-RA No alias (at3g53230 : 556.0) ATPase, AAA-type, CDC48 protein;... 0.05 Orthogroups_2024-Update
PSME_00052881-RA No alias (at5g03340 : 406.0) ATPase, AAA-type, CDC48 protein;... 0.03 Orthogroups_2024-Update
PSME_00054059-RA No alias (p54774|cdc48_soybn : 515.0) Cell division cycle protein... 0.06 Orthogroups_2024-Update
Potri.006G125500 No alias ATPase, AAA-type, CDC48 protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 124 168
IPR003959 ATPase_AAA_core 213 342
IPR003959 ATPase_AAA_core 406 462
IPR015415 Vps4_C 535 574
IPR003338 CDC4_N-term_subdom 22 102
No external refs found!