Description : (p29022|chia_maize : 228.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (at3g54420 : 208.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)
Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00037636-RA | |
Cluster | HCCA clusters: Cluster_101 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
426710 | No alias | Chitinase family protein | 0.03 | Orthogroups_2024-Update | |
A4A49_35699 | No alias | endochitinase ep3 | 0.05 | Orthogroups_2024-Update | |
Bradi5g14430 | No alias | homolog of carrot EP3-3 chitinase | 0.06 | Orthogroups_2024-Update | |
Brara.E00903.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
GRMZM2G129189 | No alias | homolog of carrot EP3-3 chitinase | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G085280.3 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
MA_10099693g0010 | No alias | (at3g54420 : 181.0) encodes an EP3 chitinase that is... | 0.03 | Orthogroups_2024-Update | |
MA_102538g0010 | No alias | (p29022|chia_maize : 115.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_10427514g0010 | No alias | (p29022|chia_maize : 267.0) Endochitinase A precursor... | 0.05 | Orthogroups_2024-Update | |
MA_10430424g0010 | No alias | (p29022|chia_maize : 207.0) Endochitinase A precursor... | 0.09 | Orthogroups_2024-Update | |
MA_10435326g0010 | No alias | (at3g54420 : 247.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
MA_114934g0010 | No alias | (at3g54420 : 218.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
MA_159244g0020 | No alias | (p29022|chia_maize : 291.0) Endochitinase A precursor... | 0.03 | Orthogroups_2024-Update | |
MA_191308g0010 | No alias | (at3g54420 : 235.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
MA_19732g0010 | No alias | (at3g54420 : 130.0) encodes an EP3 chitinase that is... | 0.06 | Orthogroups_2024-Update | |
MA_295712g0010 | No alias | (at3g54420 : 239.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
MA_36141g0010 | No alias | (at3g54420 : 245.0) encodes an EP3 chitinase that is... | 0.07 | Orthogroups_2024-Update | |
MA_44734g0010 | No alias | (p29022|chia_maize : 203.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_7544918g0010 | No alias | (p29022|chia_maize : 152.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00018393-RA | No alias | (at3g54420 : 241.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
PSME_00030535-RA | No alias | (at3g54420 : 248.0) encodes an EP3 chitinase that is... | 0.08 | Orthogroups_2024-Update | |
PSME_00036436-RA | No alias | (at3g54420 : 249.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
PSME_00041154-RA | No alias | (at3g54420 : 236.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
Potri.013G125000 | No alias | homolog of carrot EP3-3 chitinase | 0.03 | Orthogroups_2024-Update | |
Pp1s197_8V6 | No alias | chitinase | 0.02 | Orthogroups_2024-Update | |
Seita.7G150200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G150500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.7G150600.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Seita.7G150700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G132400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G132500.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sobic.006G132700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Solyc04g072000 | No alias | Chitinase (AHRD V3.3 *** A0A1B1HY32_9APIA) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004568 | chitinase activity | IEA | InterProScan predictions |
BP | GO:0006032 | chitin catabolic process | IEA | InterProScan predictions |
MF | GO:0008061 | chitin binding | IEA | InterProScan predictions |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004420 | hydroxymethylglutaryl-CoA reductase (NADPH) activity | IEP | Predicted GO |
MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Predicted GO |
BP | GO:0006950 | response to stress | IEP | Predicted GO |
BP | GO:0006952 | defense response | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009605 | response to external stimulus | IEP | Predicted GO |
BP | GO:0009607 | response to biotic stimulus | IEP | Predicted GO |
BP | GO:0009617 | response to bacterium | IEP | Predicted GO |
BP | GO:0009620 | response to fungus | IEP | Predicted GO |
MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016790 | thiolester hydrolase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | Predicted GO |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0042742 | defense response to bacterium | IEP | Predicted GO |
BP | GO:0043207 | response to external biotic stimulus | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0050832 | defense response to fungus | IEP | Predicted GO |
BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051704 | multi-organism process | IEP | Predicted GO |
BP | GO:0051707 | response to other organism | IEP | Predicted GO |
BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0098542 | defense response to other organism | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
No external refs found! |