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No description available
Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc02g070350 | |
| Cluster | HCCA clusters: Cluster_102 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 148442 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.09 | Orthogroups_2024-Update | |
| A4A49_10798 | No alias | 40s ribosomal protein s4 | 0.11 | Orthogroups_2024-Update | |
| A4A49_59874 | No alias | 40s ribosomal protein s4 | 0.08 | Orthogroups_2024-Update | |
| At2g17360 | No alias | 40S ribosomal protein S4-1... | 0.03 | Orthogroups_2024-Update | |
| At5g07090 | No alias | 40S ribosomal protein S4-2... | 0.04 | Orthogroups_2024-Update | |
| At5g58420 | No alias | 40S ribosomal protein S4-3... | 0.04 | Orthogroups_2024-Update | |
| Bradi2g35620 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.12 | Orthogroups_2024-Update | |
| Brara.B00233.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Brara.B01147.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Brara.C00278.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Brara.C01137.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Brara.J01227.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Brara.J02486.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Cre06.g308250 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.08 | Orthogroups_2024-Update | |
| GRMZM2G035017 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G125271 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.08 | Orthogroups_2024-Update | |
| Glyma.01G124300 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G047800 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G263200 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.09 | Orthogroups_2024-Update | |
| Glyma.03G050300 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.14G056900 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.06 | Orthogroups_2024-Update | |
| HORVU1Hr1G021720.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Kfl00456_0140 | kfl00456_0140_v1.1 | (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... | 0.05 | Orthogroups_2024-Update | |
| LOC_Os02g01560 | No alias | 40S ribosomal protein S4, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_127596g0010 | No alias | (at5g58420 : 436.0) Ribosomal protein S4 (RPS4A) family... | 0.05 | Orthogroups_2024-Update | |
| Mp8g03280.1 | No alias | component RPS4 of SSU proteome | 0.08 | Orthogroups_2024-Update | |
| Mp8g03290.1 | No alias | component RPS4 of SSU proteome | 0.03 | Orthogroups_2024-Update | |
| Potri.013G011000 | No alias | Ribosomal protein S4 (RPS4A) family protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s2_16V6 | No alias | 40s ribosomal protein s4 | 0.02 | Orthogroups_2024-Update | |
| Pp1s38_194V6 | No alias | 40s ribosomal s4 protein | 0.08 | Orthogroups_2024-Update | |
| Pp1s39_422V6 | No alias | 40s ribosomal s4 protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s461_1V6 | No alias | 40s ribosomal protein s4 | 0.02 | Orthogroups_2024-Update | |
| Seita.3G036600.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.19 | Orthogroups_2024-Update | |
| Seita.3G268400.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Sobic.001G018900.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Sobic.003G160900.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Sobic.009G115700.1 | No alias | component *(eS4) of small ribosomal-subunit (SSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Sopen02g019410 | No alias | Ribosomal family S4e | 0.16 | Orthogroups_2024-Update | |
| Sopen02g019420 | No alias | Ribosomal family S4e | 0.15 | Orthogroups_2024-Update | |
| Sopen02g019430 | No alias | Ribosomal family S4e | 0.1 | Orthogroups_2024-Update | |
| Sopen02g019440 | No alias | Ribosomal family S4e | 0.18 | Orthogroups_2024-Update | |
| Sopen02g019450 | No alias | Ribosomal family S4e | 0.17 | Orthogroups_2024-Update | |
| Sopen06g002290 | No alias | Ribosomal family S4e | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_832.1 | No alias | (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... | 0.18 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0015031 | protein transport | IEP | Predicted GO |
| BP | GO:0015833 | peptide transport | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0042886 | amide transport | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
| MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
| BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |