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  5. PSME_00037862-RA

PSME_00037862-RA


Description : (at1g07850 : 255.0) Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 101 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 16; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 510.0) & (original description: no original description)


Gene families : OG_42_0000161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000161_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037862-RA
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Brara.B02563.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C04424.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00038.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J00349.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G061202 No alias Protein of unknown function (DUF604) 0.02 Orthogroups_2024-Update
Glyma.11G221600 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
LOC_Os03g03270 No alias fringe-related protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00019080-RA No alias (at5g41460 : 468.0) Protein of unknown function... 0.05 Orthogroups_2024-Update
PSME_00019635-RA No alias (at1g01570 : 157.0) FUNCTIONS IN: transferase activity,... 0.04 Orthogroups_2024-Update
Solyc12g056200 No alias transferring glycosyl group transferase (DUF604) (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0008156 negative regulation of DNA replication IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0048478 replication fork protection IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051053 negative regulation of DNA metabolic process IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006740 DUF604 201 315
IPR006740 DUF604 99 199
No external refs found!