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PSME_00037971-RA


Description : (at1g67480 : 337.0) Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27420.1); Has 11510 Blast hits to 6062 proteins in 581 species: Archae - 21; Bacteria - 896; Metazoa - 8265; Fungi - 112; Plants - 1475; Viruses - 165; Other Eukaryotes - 576 (source: NCBI BLink). & (reliability: 674.0) & (original description: no original description)


Gene families : OG_42_0002284 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002284_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00037971-RA

Target Alias Description ECC score Gene Family Method Actions
Brara.G02708.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H02070.1 No alias Unknown function 0.01 Orthogroups_2024-Update
MA_137994g0010 No alias (at1g67480 : 402.0) Galactose oxidase/kelch repeat... 0.01 Orthogroups_2024-Update
PSME_00028382-RA No alias (at1g67480 : 268.0) Galactose oxidase/kelch repeat... 0.02 Orthogroups_2024-Update
PSME_00028384-RA No alias (at1g67480 : 398.0) Galactose oxidase/kelch repeat... 0.01 Orthogroups_2024-Update
PSME_00028385-RA No alias (at1g67480 : 421.0) Galactose oxidase/kelch repeat... 0.02 Orthogroups_2024-Update
Seita.7G067800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.004G153400.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR006652 Kelch_1 208 253
IPR006652 Kelch_1 255 300
IPR011498 Kelch_2 304 347
IPR001810 F-box_dom 117 156
No external refs found!