1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00038042-RA

PSME_00038042-RA


Description : (at5g06710 : 121.0) Homeobox-leucine zipper protein.; homeobox from Arabidopsis thaliana (HAT14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT4G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 236.0) & (original description: no original description)


Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038042-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
A4A49_15384 No alias homeobox-leucine zipper protein hat14 0.03 Orthogroups_2024-Update
At4g17460 No alias Homeobox-leucine zipper protein HAT1... 0.04 Orthogroups_2024-Update
At4g37790 No alias Homeobox-leucine zipper protein HAT22... 0.02 Orthogroups_2024-Update
At5g06710 No alias Homeobox-leucine zipper protein HAT14... 0.05 Orthogroups_2024-Update
Bradi3g03970 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Bradi3g21480 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Brara.A01857.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C04552.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G047715 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
GRMZM5G830671 No alias homeobox protein 2 0.02 Orthogroups_2024-Update
Glyma.05G062700 No alias homeobox protein 2 0.03 Orthogroups_2024-Update
Glyma.17G056300 No alias homeobox from Arabidopsis thaliana 0.03 Orthogroups_2024-Update
Glyma.17G232210 No alias Homeobox-leucine zipper protein family 0.04 Orthogroups_2024-Update
LOC_Os01g45570 No alias homeobox associated leucine zipper, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g12860 No alias homeobox associated leucine zipper, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g04870 No alias homeobox associated leucine zipper, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g41230 No alias homeobox associated leucine zipper, putative, expressed 0.02 Orthogroups_2024-Update
MA_194299g0010 No alias (at5g06710 : 199.0) Homeobox-leucine zipper protein.;... 0.03 Orthogroups_2024-Update
MA_57689g0010 No alias (at5g06710 : 222.0) Homeobox-leucine zipper protein.;... 0.04 Orthogroups_2024-Update
PSME_00018809-RA No alias (at5g06710 : 140.0) Homeobox-leucine zipper protein.;... 0.03 Orthogroups_2024-Update
PSME_00028375-RA No alias (at5g06710 : 210.0) Homeobox-leucine zipper protein.;... 0.04 Orthogroups_2024-Update
Potri.002G113400 No alias Homeobox-leucine zipper protein family 0.03 Orthogroups_2024-Update
Potri.007G008200 No alias Homeobox-leucine zipper protein family 0.02 Orthogroups_2024-Update
Seita.5G241600.1 No alias HD-ZIP I/II-type transcription factor 0.05 Orthogroups_2024-Update
Seita.9G301000.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Solyc08g078300 No alias Homeobox-leucine zipper family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 93 137
No external refs found!