1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00038084-RA

PSME_00038084-RA


Description : (at2g13600 : 518.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 153.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1036.0) & (original description: no original description)


Gene families : OG_42_0022384 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038084-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
MA_51694g0010 No alias (at2g22070 : 661.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 408 431
IPR002885 Pentatricopeptide_repeat 273 300
IPR002885 Pentatricopeptide_repeat 773 796
IPR002885 Pentatricopeptide_repeat 672 693
IPR002885 Pentatricopeptide_repeat 245 269
IPR002885 Pentatricopeptide_repeat 568 596
IPR002885 Pentatricopeptide_repeat 467 496
IPR002885 Pentatricopeptide_repeat 839 867
IPR002885 Pentatricopeptide_repeat 436 465
IPR002885 Pentatricopeptide_repeat 87 122
IPR002885 Pentatricopeptide_repeat 333 381
IPR002885 Pentatricopeptide_repeat 177 224
IPR002885 Pentatricopeptide_repeat 697 746
IPR002885 Pentatricopeptide_repeat 597 642
No external refs found!