PSME_00038114-RA

Description : (q9lw48|erf5_nicsy : 94.4) Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 5 homolog) (EREBP-4) (NsERF4) - Nicotiana sylvestris (Wood tobacco) & (at5g61590 : 93.6) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.; Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G07580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00038114-RA
Cluster	HCCA clusters: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
GRMZM5G837876	No alias	ethylene-responsive element binding factor 15	0.02	Orthogroups_2024-Update
Glyma.01G206700	No alias	ethylene responsive element binding factor 5	0.04	Orthogroups_2024-Update
Glyma.04G041200	No alias	DREB and EAR motif protein 3	0.03	Orthogroups_2024-Update
Glyma.13G123100	No alias	ethylene response factor 1	0.03	Orthogroups_2024-Update
Glyma.15G077000	No alias	ERF domain protein 12	0.03	Orthogroups_2024-Update
Glyma.18G252300	No alias	ethylene-responsive element binding factor 13	0.06	Orthogroups_2024-Update
MA_364562g0010	No alias	(at2g25820 : 110.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
PSME_00008897-RA	No alias	(at4g17500 : 88.2) Encodes a member of the ERF (ethylene...	0.03	Orthogroups_2024-Update
PSME_00032588-RA	No alias	(at4g17490 : 92.8) Encodes a member of the ERF (ethylene...	0.04	Orthogroups_2024-Update
PSME_00046052-RA	No alias	(at1g19210 : 89.0) encodes a member of the DREB...	0.06	Orthogroups_2024-Update
PSME_00047383-RA	No alias	(at5g21960 : 119.0) encodes a member of the DREB...	0.08	Orthogroups_2024-Update
Potri.001G154100	No alias	ethylene responsive element binding factor 1	0.02	Orthogroups_2024-Update
Potri.009G101900	No alias	redox responsive transcription factor 1	0.02	Orthogroups_2024-Update
Seita.1G027000.1	No alias	subgroup ERF-III transcription factor	0.07	Orthogroups_2024-Update
Seita.2G364700.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
Sobic.010G071700.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.04	Orthogroups_2024-Update
Sobic.010G089700.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
Sopen03g024410	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004857	enzyme inhibitor activity	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016843	amine-lyase activity	IEP	Predicted GO
MF	GO:0016844	strictosidine synthase activity	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
MF	GO:0030599	pectinesterase activity	IEP	Predicted GO
BP	GO:0042545	cell wall modification	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predicted GO
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	104	154

External Links

No external refs found!

PSME_00038114-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation