Description : (at5g52630 : 598.0) Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes.; mitochondrial RNAediting factor 1 (MEF1); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G04780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 103.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1196.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00038145-RA | |
Cluster | HCCA clusters: Cluster_225 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
97289 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
At3g20730 | No alias | Pentatricopeptide repeat-containing protein At3g20730... | 0.03 | Orthogroups_2024-Update | |
At3g29230 | No alias | Pentatricopeptide repeat-containing protein At3g29230... | 0.02 | Orthogroups_2024-Update | |
Bradi2g45110 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G088000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G073600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G090900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G111860.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os12g06070 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
MA_100287g0010 | No alias | (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_211508g0010 | No alias | (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_230261g0010 | No alias | (at4g13650 : 756.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_56322g0010 | No alias | (at2g22070 : 606.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_59148g0010 | No alias | (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_658463g0010 | No alias | (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_67032g0010 | No alias | (at3g12770 : 625.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00013280-RA | No alias | (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00018763-RA | No alias | (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Potri.011G156800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s26_188V6 | No alias | No description available | 0.03 | Orthogroups_2024-Update | |
Solyc03g093630 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc04g076330 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen11g024580 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006787 | porphyrin-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Predicted GO |
BP | GO:0015996 | chlorophyll catabolic process | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
BP | GO:0017003 | protein-heme linkage | IEP | Predicted GO |
BP | GO:0017004 | cytochrome complex assembly | IEP | Predicted GO |
BP | GO:0017006 | protein-tetrapyrrole linkage | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033015 | tetrapyrrole catabolic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0046149 | pigment catabolic process | IEP | Predicted GO |
MF | GO:0047746 | chlorophyllase activity | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 513 | 636 |
IPR002885 | Pentatricopeptide_repeat | 414 | 438 |
IPR002885 | Pentatricopeptide_repeat | 313 | 336 |
IPR002885 | Pentatricopeptide_repeat | 111 | 136 |
IPR002885 | Pentatricopeptide_repeat | 485 | 508 |
IPR002885 | Pentatricopeptide_repeat | 339 | 386 |
IPR002885 | Pentatricopeptide_repeat | 238 | 285 |
IPR002885 | Pentatricopeptide_repeat | 139 | 182 |
No external refs found! |