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  5. PSME_00038326-RA

PSME_00038326-RA


Description : (at3g50660 : 528.0) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.; DWARF 4 (DWF4); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G05690.1); Has 31120 Blast hits to 31036 proteins in 1650 species: Archae - 61; Bacteria - 5303; Metazoa - 10591; Fungi - 5722; Plants - 7996; Viruses - 3; Other Eukaryotes - 1444 (source: NCBI BLink). & (q6f4f5|c724b_orysa : 400.0) Cytochrome P450 724B1 (EC 1.14.-.-) (OsDWARF11) (Dwarf protein 11) - Oryza sativa (Rice) & (reliability: 1056.0) & (original description: no original description)


Gene families : OG_42_0000020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038326-RA
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
At3g30290 No alias Cytochrome P450, family 702, subfamily A, polypeptide 8... 0.03 Orthogroups_2024-Update
Bradi5g18780 No alias cytochrome P450, family 87, subfamily A, polypeptide 2 0.03 Orthogroups_2024-Update
Glyma.02G290000 No alias cytochrome P450, family 716, subfamily A, polypeptide 1 0.05 Orthogroups_2024-Update
Glyma.05G170400 No alias cytochrome P450, family 716, subfamily A, polypeptide 1 0.04 Orthogroups_2024-Update
Glyma.09G144300 No alias cytochrome P450, family 716, subfamily A, polypeptide 2 0.03 Orthogroups_2024-Update
Glyma.11G067700 No alias Cytochrome P450 superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G011170.2 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.03 Orthogroups_2024-Update
HORVU2Hr1G064640.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.04 Orthogroups_2024-Update
HORVU2Hr1G102260.2 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.04 Orthogroups_2024-Update
HORVU4Hr1G032830.3 No alias 6-deoxocastasterone 6-oxidase *(BR6OX) & EC_1.14... 0.02 Orthogroups_2024-Update
LOC_Os03g40540 No alias cytochrome P450, putative, expressed 0.02 Orthogroups_2024-Update
MA_503588g0010 No alias "(at5g36110 : 232.0) member of CYP716A; ""cytochrome... 0.02 Orthogroups_2024-Update
MA_8538790g0010 No alias "(at5g36110 : 204.0) member of CYP716A; ""cytochrome... 0.04 Orthogroups_2024-Update
Mp1g25410.1 No alias Ent-kaurenoic acid oxidase 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp4g23680.1 No alias ent-kaurene oxidase 0.02 Orthogroups_2024-Update
PSME_00018027-RA No alias "(at4g19230 : 263.0) Encodes a protein with ABA... 0.03 Orthogroups_2024-Update
PSME_00035721-RA No alias (at2g32440 : 539.0) ent-kaurenoic acid hydroxylase... 0.05 Orthogroups_2024-Update
PSME_00042598-RA No alias "(at5g36110 : 440.0) member of CYP716A; ""cytochrome... 0.04 Orthogroups_2024-Update
Potri.001G270500 No alias cytochrome P450, family 87, subfamily A, polypeptide 2 0.02 Orthogroups_2024-Update
Potri.001G341000 No alias cytochrome P450, family 724, subfamily A, polypeptide 1 0.02 Orthogroups_2024-Update
Potri.004G017800 No alias cytochrome P450, family 716, subfamily A, polypeptide 1 0.03 Orthogroups_2024-Update
Potri.007G018400 No alias Cytochrome P450 superfamily protein 0.04 Orthogroups_2024-Update
Potri.018G135100 No alias cytochrome P450, family 716, subfamily A, polypeptide 1 0.03 Orthogroups_2024-Update
Pp1s16_116V6 No alias cytochrome p450 0.02 Orthogroups_2024-Update
Sobic.001G164100.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.03 Orthogroups_2024-Update
Sobic.001G172400.1 No alias 6-deoxocastasterone 6-oxidase *(BR6OX) & EC_1.14... 0.04 Orthogroups_2024-Update
Sobic.005G192500.1 No alias EC_1.14 oxidoreductase acting on paired donor with... 0.04 Orthogroups_2024-Update
Sobic.010G007700.1 No alias ent-kaurene oxidase *(KAO) & EC_1.14 oxidoreductase... 0.04 Orthogroups_2024-Update
Solyc04g078900 No alias ABA 8'-hydroxylase 0.04 Orthogroups_2024-Update
Solyc05g021390 No alias Cytochrome P450 (AHRD V3.3 *** A0A161ABB0_OCIBA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA InterProScan predictions
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA InterProScan predictions
MF GO:0020037 heme binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001128 Cyt_P450 319 425
IPR001128 Cyt_P450 44 318
No external refs found!