Description : (p10053|rbs_pinth : 290.0) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) - Pinus thunbergii (Green pine) (Japanese black pine) & (at1g67090 : 225.0) ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 450.0) & (original description: no original description)
Gene families : OG_42_0000599 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000599_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00038451-RA | |
Cluster | HCCA clusters: Cluster_95 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi4g08500 | No alias | ribulose bisphosphate carboxylase small chain 1A | 0.04 | Orthogroups_2024-Update | |
Bradi4g08800 | No alias | ribulose bisphosphate carboxylase small chain 1A | 0.04 | Orthogroups_2024-Update | |
Bradi5g04080 | No alias | ribulose bisphosphate carboxylase small chain 1A | 0.04 | Orthogroups_2024-Update | |
Cre02.g120100 | No alias | ribulose bisphosphate carboxylase small chain 1A | 0.02 | Orthogroups_2024-Update | |
HORVU5Hr1G051010.2 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.03 | Orthogroups_2024-Update | |
Kfl00002_0370 | kfl00002_0370_v1.1 | (q40250|rbs_lacsa : 209.0) Ribulose bisphosphate... | 0.02 | Orthogroups_2024-Update | |
Kfl00012_0630 | kfl00012_0630_v1.1 | (p26573|rbs8_nicpl : 186.0) Ribulose bisphosphate... | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g05830 | No alias | ribulose bisphosphate carboxylase small chain,... | 0.02 | Orthogroups_2024-Update | |
Mp4g05990.1 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.03 | Orthogroups_2024-Update | |
Mp4g06000.1 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.02 | Orthogroups_2024-Update | |
Mp4g06040.1 | No alias | small subunit of ribulose-1,5-bisphosphat... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0003885 | D-arabinono-1,4-lactone oxidase activity | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | Predicted GO |
BP | GO:0006144 | purine nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0006629 | lipid metabolic process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0009112 | nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0009250 | glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
MF | GO:0016759 | cellulose synthase activity | IEP | Predicted GO |
MF | GO:0016760 | cellulose synthase (UDP-forming) activity | IEP | Predicted GO |
MF | GO:0016899 | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | IEP | Predicted GO |
BP | GO:0030243 | cellulose metabolic process | IEP | Predicted GO |
BP | GO:0030244 | cellulose biosynthetic process | IEP | Predicted GO |
BP | GO:0030258 | lipid modification | IEP | Predicted GO |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
BP | GO:0046834 | lipid phosphorylation | IEP | Predicted GO |
BP | GO:0046854 | phosphatidylinositol phosphorylation | IEP | Predicted GO |
BP | GO:0051273 | beta-glucan metabolic process | IEP | Predicted GO |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000894 | RuBisCO_sc_dom | 79 | 185 |
No external refs found! |