PSME_00038465-RA

Description : (p41098|rl34_tobac : 177.0) 60S ribosomal protein L34 - Nicotiana tabacum (Common tobacco) & (at1g26880 : 174.0) Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1); Has 937 Blast hits to 937 proteins in 311 species: Archae - 67; Bacteria - 0; Metazoa - 288; Fungi - 137; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)

Gene families : OG_42_0001465 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001465_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00038465-RA
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
113433	No alias	Ribosomal protein L34e superfamily protein	0.03	Orthogroups_2024-Update
A4A49_12213	No alias	60s ribosomal protein l34	0.09	Orthogroups_2024-Update
A4A49_36196	No alias	60s ribosomal protein l34	0.04	Orthogroups_2024-Update
At1g26880	No alias	60S ribosomal protein L34-1...	0.09	Orthogroups_2024-Update
Bradi3g16600	No alias	Ribosomal protein L34e superfamily protein	0.15	Orthogroups_2024-Update
Bradi3g16620	No alias	Ribosomal protein L34e superfamily protein	0.06	Orthogroups_2024-Update
Bradi3g37060	No alias	Ribosomal protein L34e superfamily protein	0.04	Orthogroups_2024-Update
Brara.B01869.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.G02472.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.G02897.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Brara.I00329.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Cre16.g661050	No alias	Ribosomal protein L34e superfamily protein	0.2	Orthogroups_2024-Update
Glyma.01G047000	No alias	Ribosomal protein L34e superfamily protein	0.09	Orthogroups_2024-Update
Glyma.02G107100	No alias	Ribosomal protein L34e superfamily protein	0.07	Orthogroups_2024-Update
Glyma.08G301300	No alias	Ribosomal protein L34e superfamily protein	0.17	Orthogroups_2024-Update
Glyma.09G239000	No alias	Ribosomal protein L34e superfamily protein	0.06	Orthogroups_2024-Update
Glyma.18G119100	No alias	Ribosomal protein L34e superfamily protein	0.05	Orthogroups_2024-Update
HORVU2Hr1G080340.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
HORVU5Hr1G066000.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
HORVU7Hr1G071240.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Kfl00598_0060	kfl00598_0060_v1.1	(p40590\|rl34_pea : 144.0) 60S ribosomal protein L34 -...	0.05	Orthogroups_2024-Update
LOC_Os08g33920	No alias	60S ribosomal protein L34, putative, expressed	0.05	Orthogroups_2024-Update
MA_175574g0010	No alias	(p41098\|rl34_tobac : 177.0) 60S ribosomal protein L34 -...	0.13	Orthogroups_2024-Update
Mp4g17040.1	No alias	component RPL34 of LSU proteome component	0.08	Orthogroups_2024-Update
Potri.012G108400	No alias	Ribosomal protein L34e superfamily protein	0.05	Orthogroups_2024-Update
Potri.015G106500	No alias	Ribosomal protein L34e superfamily protein	0.03	Orthogroups_2024-Update
Potri.017G082200	No alias	Ribosomal protein L34e superfamily protein	0.1	Orthogroups_2024-Update
Pp1s200_25V6	No alias	60s ribosomal protein l34	0.03	Orthogroups_2024-Update
Pp1s39_344V6	No alias	60s ribosomal protein	0.2	Orthogroups_2024-Update
Pp1s39_364V6	No alias	60s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s76_47V6	No alias	60s ribosomal protein l34	0.09	Orthogroups_2024-Update
Seita.2G204000.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Seita.6G057100.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.6G160000.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Seita.7G124100.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Sobic.002G200600.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Sobic.007G045700.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.007G138700.1	No alias	component *(eL34) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Solyc02g087930	No alias	60S ribosomal protein L34 (AHRD V3.3 *** RL34_TOBAC)	0.03	Orthogroups_2024-Update
Solyc05g007560	No alias	60S ribosomal protein L34 (AHRD V3.3 *** RL34_TOBAC)	0.14	Orthogroups_2024-Update
Solyc06g069860	No alias	60S ribosomal protein L34 (AHRD V3.3 *** RL34_TOBAC)	0.14	Orthogroups_2024-Update
Sopen05g003450	No alias	Ribosomal protein L34e	0.14	Orthogroups_2024-Update
Sopen06g027130	No alias	Ribosomal protein L34e	0.1	Orthogroups_2024-Update
evm.model.contig_445.6	No alias	(p41098\|rl34_tobac : 125.0) 60S ribosomal protein L34 -...	0.22	Orthogroups_2024-Update
evm.model.tig00000632.3	No alias	(at1g26880 : 109.0) Ribosomal protein L34e superfamily...	0.11	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR008195	Ribosomal_L34Ae	1	96

External Links

No external refs found!

PSME_00038465-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation