1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00038483-RA

PSME_00038483-RA


Description : (at1g68920 : 200.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038483-RA
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_37228 No alias transcription factor hbi1 0.02 Orthogroups_2024-Update
Bradi4g19577 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00369.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
GRMZM2G144275 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os08g42470 No alias BEE 1, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00008023-RA No alias (at1g26260 : 101.0) Encodes CIB5... 0.05 Orthogroups_2024-Update
PSME_00019949-RA No alias (at1g68920 : 206.0) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00044409-RA No alias (at1g68920 : 179.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 197 245
No external refs found!