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  5. PSME_00038570-RA

PSME_00038570-RA


Description : (at2g17840 : 140.0) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.; EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)


Gene families : OG_42_0000682 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000682_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038570-RA
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
At3g21590 No alias Senescence/dehydration-associated protein-like protein... 0.03 Orthogroups_2024-Update
Brara.E02057.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03457.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.08G033700 No alias Senescence/dehydration-associated protein-related 0.02 Orthogroups_2024-Update
PSME_00003384-RA No alias (at4g15450 : 259.0) Senescence/dehydration-associated... 0.04 Orthogroups_2024-Update
Potri.018G087500 No alias Senescence/dehydration-associated protein-related 0.02 Orthogroups_2024-Update
Pp1s1_95V6 No alias T19K4.3; senescence/dehydration-associated... 0.03 Orthogroups_2024-Update
Sobic.003G280600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009686 Senescence/spartin 148 192
No external refs found!