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  5. PSME_00038756-RA

PSME_00038756-RA


Description : (at1g07090 : 219.0) LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038756-RA
Cluster HCCA clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
A4A49_00415 No alias protein light-dependent short hypocotyls 4 0.08 Orthogroups_2024-Update
A4A49_21067 No alias protein g1-like9 0.07 Orthogroups_2024-Update
Brara.E00304.1 No alias plant-specific ALOG-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.10G037600 No alias Protein of unknown function (DUF640) 0.06 Orthogroups_2024-Update
LOC_Os06g46030 No alias DUF640 domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_12926g0010 No alias (at3g23290 : 222.0) LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4);... 0.05 Orthogroups_2024-Update
Potri.001G460400 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Pp1s10_72V6 No alias T16B12.3; expressed protein [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 36 155
No external refs found!