1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00038778-RA

PSME_00038778-RA


Description : (at4g25800 : 423.0) Calmodulin-binding protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT5G57580.1); Has 340 Blast hits to 325 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description)


Gene families : OG_42_0000455 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000455_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038778-RA
Cluster HCCA clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
166784 No alias Calmodulin-binding protein 0.04 Orthogroups_2024-Update
A4A49_40037 No alias protein sar deficient 1 0.03 Orthogroups_2024-Update
Bradi2g02310 No alias Calmodulin-binding protein 0.07 Orthogroups_2024-Update
Brara.A00657.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.04 Orthogroups_2024-Update
Brara.D01457.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.04 Orthogroups_2024-Update
Brara.F02487.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.03 Orthogroups_2024-Update
GRMZM2G427418 No alias Calmodulin-binding protein 0.02 Orthogroups_2024-Update
Glyma.03G232400 No alias Calmodulin-binding protein 0.04 Orthogroups_2024-Update
Glyma.07G093900 No alias Calmodulin binding protein-like 0.02 Orthogroups_2024-Update
Glyma.08G044400 No alias Calmodulin binding protein-like 0.03 Orthogroups_2024-Update
Glyma.09G182400 No alias Calmodulin binding protein-like 0.03 Orthogroups_2024-Update
Glyma.15G067700 No alias Calmodulin-binding protein 0.03 Orthogroups_2024-Update
Glyma.17G065500 No alias Calmodulin-binding protein 0.03 Orthogroups_2024-Update
LOC_Os02g35470 No alias calmodulin binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g13890 No alias calmodulin binding protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.004G035100 No alias Calmodulin-binding protein 0.04 Orthogroups_2024-Update
Potri.012G054900 No alias Calmodulin binding protein-like 0.06 Orthogroups_2024-Update
Potri.015G045300 No alias Calmodulin binding protein-like 0.05 Orthogroups_2024-Update
Potri.015G071800 No alias Calmodulin binding protein-like 0.04 Orthogroups_2024-Update
Seita.1G198000.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.03 Orthogroups_2024-Update
Seita.5G091900.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.03 Orthogroups_2024-Update
Seita.7G110800.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.02 Orthogroups_2024-Update
Sobic.003G083200.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.04 Orthogroups_2024-Update
Sobic.004G063100.2 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.03 Orthogroups_2024-Update
Sobic.004G181700.1 No alias regulatory protein *(CBP60) of systemic acquired resistance 0.03 Orthogroups_2024-Update
Solyc12g036390 No alias Calmodulin binding protein-like, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen07g002930 No alias Calmodulin binding protein-like 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR012416 CBP60 100 389
No external refs found!