PSME_00038811-RA

Description : (at1g09530 : 147.0) Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.; phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)

Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00038811-RA
Cluster	HCCA clusters: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
39143	No alias	phytochrome interacting factor 3	0.02	Orthogroups_2024-Update
Bradi1g06670	No alias	phytochrome interacting factor 3-like 6	0.02	Orthogroups_2024-Update
Brara.G00063.1	No alias	regulatory protein *(PIF) of red/far-red light...	0.01	Orthogroups_2024-Update
Brara.G01197.1	No alias	bHLH-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G016756	No alias	phytochrome interacting factor 4	0.04	Orthogroups_2024-Update
GRMZM2G030744	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G115960	No alias	phytochrome interacting factor 3	0.02	Orthogroups_2024-Update
Glyma.03G225000	No alias	phytochrome interacting factor 3	0.04	Orthogroups_2024-Update
Glyma.08G303900	No alias	phytochrome interacting factor 4	0.03	Orthogroups_2024-Update
Glyma.19G222000	No alias	phytochrome interacting factor 3	0.02	Orthogroups_2024-Update
HORVU5Hr1G011780.5	No alias	regulatory protein *(PIF) of red/far-red light...	0.02	Orthogroups_2024-Update
HORVU5Hr1G102240.2	No alias	bHLH-type transcription factor	0.03	Orthogroups_2024-Update
Potri.013G001300	No alias	phytochrome interacting factor 3	0.04	Orthogroups_2024-Update
Potri.014G111400	No alias	phytochrome interacting factor 3	0.02	Orthogroups_2024-Update
Sopen04g032290	No alias	Helix-loop-helix DNA-binding domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0003951	NAD+ kinase activity	IEP	Predicted GO
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0006741	NADP biosynthetic process	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
MF	GO:0019900	kinase binding	IEP	Predicted GO
MF	GO:0019901	protein kinase binding	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0042325	regulation of phosphorylation	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0043549	regulation of kinase activity	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
BP	GO:0045859	regulation of protein kinase activity	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051338	regulation of transferase activity	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	552	598

External Links

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PSME_00038811-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation