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  5. PSME_00038970-RA

PSME_00038970-RA


Description : (at5g64270 : 226.0) splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 452.0) & (original description: no original description)


Gene families : OG_42_0001775 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001775_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038970-RA
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
PSME_00003514-RA No alias (at5g64270 : 350.0) splicing factor, putative; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00013435-RA No alias (at5g64270 : 271.0) splicing factor, putative; FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00016386-RA No alias (at5g64270 : 466.0) splicing factor, putative; FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00032346-RA No alias (at5g64270 : 453.0) splicing factor, putative; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00037219-RA No alias (at5g64270 : 421.0) splicing factor, putative; FUNCTIONS... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!