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  5. PSME_00038975-RA

PSME_00038975-RA


Description : (at5g57250 : 296.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink). & (q76c99|rf1_orysa : 229.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 592.0) & (original description: no original description)


Gene families : OG_42_0006661 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006661_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00038975-RA
Cluster HCCA clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
PSME_00009797-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 337 382
IPR002885 Pentatricopeptide_repeat 9 48
IPR002885 Pentatricopeptide_repeat 124 173
IPR002885 Pentatricopeptide_repeat 463 512
IPR002885 Pentatricopeptide_repeat 753 789
IPR002885 Pentatricopeptide_repeat 533 582
IPR002885 Pentatricopeptide_repeat 229 277
IPR002885 Pentatricopeptide_repeat 55 102
IPR002885 Pentatricopeptide_repeat 436 460
IPR002885 Pentatricopeptide_repeat 197 227
IPR002885 Pentatricopeptide_repeat 599 630
No external refs found!