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  5. Sopen06g008220

Sopen06g008220


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0001783 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001783_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g008220
Cluster HCCA clusters: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
Solyc09g007690 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g012460 No alias No description available 0.04 Orthogroups_2024-Update
Sopen00g009510 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen03g007400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g007590 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029472 Copia-like_N 16 59
IPR005162 Retrotrans_gag_dom 82 186
No external refs found!