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PSME_00039109-RA


Description : (at3g19540 : 416.0) Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G49840.1); Has 219 Blast hits to 218 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)


Gene families : OG_42_0002142 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039109-RA
Cluster HCCA clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14850 No alias Protein of unknown function (DUF620) 0.04 Orthogroups_2024-Update
LOC_Os12g39160 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_104694g0010 No alias (at3g19540 : 575.0) Protein of unknown function... 0.04 Orthogroups_2024-Update
Solyc04g078190 No alias glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006873 DUF620 124 366
No external refs found!