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  5. PSME_00039168-RA

PSME_00039168-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0007819 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007819_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039168-RA
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
PSME_00009807-RA No alias (at3g05500 : 103.0) Rubber elongation factor protein... 0.02 Orthogroups_2024-Update
PSME_00030976-RA No alias (at3g05500 : 100.0) Rubber elongation factor protein... 0.04 Orthogroups_2024-Update
PSME_00034382-RA No alias (at3g05500 : 101.0) Rubber elongation factor protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022003 RST 100 147
IPR008802 REF 3 121
No external refs found!