1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00039314-RA

PSME_00039314-RA


Description : "(at3g49690 : 223.0) ""Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. ""; myb domain protein 84 (MYB84); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 8670 Blast hits to 8092 proteins in 466 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 404; Plants - 5917; Viruses - 3; Other Eukaryotes - 1656 (source: NCBI BLink). & (q50ex6|odo1_pethy : 155.0) ODORANT1 protein (MYB-like protein ODO1) - Petunia hybrida (Petunia) & (reliability: 446.0) & (original description: no original description)"


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00039314-RA
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
A4A49_13374 No alias myb-related protein zm1 0.03 Orthogroups_2024-Update
At3g49690 No alias RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29] 0.04 Orthogroups_2024-Update
At3g62610 No alias Transcription factor MYB11... 0.04 Orthogroups_2024-Update
At5g06100 No alias Transcription factor MYB33... 0.02 Orthogroups_2024-Update
Bradi1g61160 No alias myb domain protein 96 0.04 Orthogroups_2024-Update
Bradi1g61397 No alias myb domain protein 50 0.03 Orthogroups_2024-Update
Bradi2g01960 No alias myb domain protein 62 0.03 Orthogroups_2024-Update
Bradi2g17280 No alias myb domain protein 36 0.05 Orthogroups_2024-Update
Bradi2g24400 No alias myb domain protein 6 0.03 Orthogroups_2024-Update
Bradi2g37377 No alias myb domain protein 48 0.03 Orthogroups_2024-Update
Bradi3g49190 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Bradi5g20130 No alias myb domain protein 63 0.02 Orthogroups_2024-Update
Brara.B00599.1 No alias MYB class-R2R3 subgroup-8 transcription factor 0.02 Orthogroups_2024-Update
Brara.C00533.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.C03242.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.F00557.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Brara.F03146.1 No alias transcriptional regulator *(TDF1) 0.03 Orthogroups_2024-Update
Brara.G03643.1 No alias MYB class-R2R3 subgroup-3 transcription factor 0.04 Orthogroups_2024-Update
Brara.I03072.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G013581 No alias myb domain protein 48 0.03 Orthogroups_2024-Update
GRMZM2G069325 No alias myb domain protein 36 0.02 Orthogroups_2024-Update
GRMZM2G084799 No alias myb domain protein 12 0.02 Orthogroups_2024-Update
GRMZM2G160838 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Glyma.02G110100 No alias myb domain protein 106 0.04 Orthogroups_2024-Update
Glyma.05G234600 No alias myb domain protein 116 0.03 Orthogroups_2024-Update
Glyma.06G178600 No alias myb domain protein 86 0.03 Orthogroups_2024-Update
Glyma.09G261600 No alias myb domain protein 17 0.04 Orthogroups_2024-Update
Glyma.10G006600 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Glyma.10G180800 No alias myb domain protein 15 0.08 Orthogroups_2024-Update
Glyma.12G218200 No alias MYB-like 102 0.03 Orthogroups_2024-Update
Glyma.13G038100 No alias myb domain protein 57 0.02 Orthogroups_2024-Update
Glyma.15G144000 No alias myb domain protein 111 0.02 Orthogroups_2024-Update
Glyma.15G259400 No alias myb domain protein 63 0.04 Orthogroups_2024-Update
Glyma.19G164600 No alias myb domain protein 15 0.04 Orthogroups_2024-Update
Glyma.19G184500 No alias myb domain protein 36 0.03 Orthogroups_2024-Update
Glyma.20G090700 No alias myb domain protein 61 0.03 Orthogroups_2024-Update
LOC_Os06g14670 No alias ODORANT1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g46560 No alias myb-like DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g15020 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431212g0010 No alias (at1g63910 : 180.0) member of MYB3R- and R2R3- type MYB-... 0.04 Orthogroups_2024-Update
MA_124887g0010 No alias (at4g38620 : 244.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
MA_139924g0010 No alias (at4g38620 : 266.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
MA_15687g0010 No alias (at5g49620 : 209.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
Mp3g23170.1 No alias transcription factor (MYB) 0.02 Orthogroups_2024-Update
PSME_00010370-RA No alias (at5g62470 : 192.0) Encodes a R2R3 type Myb... 0.03 Orthogroups_2024-Update
PSME_00018495-RA No alias (at3g02940 : 176.0) Encodes a putative transcription... 0.03 Orthogroups_2024-Update
PSME_00024743-RA No alias (at1g63910 : 232.0) member of MYB3R- and R2R3- type MYB-... 0.03 Orthogroups_2024-Update
PSME_00028312-RA No alias (at1g66230 : 243.0) Encodes a putative transcription... 0.04 Orthogroups_2024-Update
PSME_00053331-RA No alias (at3g61250 : 251.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
Potri.005G112000 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Potri.008G101400 No alias myb domain protein 108 0.02 Orthogroups_2024-Update
Potri.009G018700 No alias myb domain protein 33 0.02 Orthogroups_2024-Update
Potri.010G123000 No alias myb domain protein 62 0.02 Orthogroups_2024-Update
Potri.015G041100 No alias myb domain protein 3 0.02 Orthogroups_2024-Update
Potri.015G046200 No alias myb domain protein 116 0.02 Orthogroups_2024-Update
Seita.1G250600.1 No alias regulatory protein *(LAF1) of phytochrome signalling... 0.04 Orthogroups_2024-Update
Seita.3G051800.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Seita.3G402900.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.04 Orthogroups_2024-Update
Seita.5G028900.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.04 Orthogroups_2024-Update
Seita.5G283200.1 No alias MYB class-R2R3 transcription factor 0.05 Orthogroups_2024-Update
Seita.6G154200.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Seita.7G285100.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G201000.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G423300.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.04 Orthogroups_2024-Update
Sobic.003G142300.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Sobic.008G131400.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G148100.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Solyc05g048830 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PRS4_SALMI) 0.02 Orthogroups_2024-Update
Solyc06g069850 No alias R2R3MYB transcription factor 30 0.04 Orthogroups_2024-Update
Solyc07g053230 No alias R2R3MYB transcription factor 83 0.02 Orthogroups_2024-Update
Solyc08g065910 No alias blind-like5 0.03 Orthogroups_2024-Update
Solyc10g081490 No alias R2R3MYB transcription factor 60 0.04 Orthogroups_2024-Update
Solyc12g008670 No alias blind-like4 0.03 Orthogroups_2024-Update
Sopen01g006750 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen01g031400 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen01g038150 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Sopen02g031450 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen05g004090 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen06g023610 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen06g031320 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 69 111
IPR001005 SANT/Myb 14 62
No external refs found!